MersV1, Main, Exploration, bibRecord, 000081

SimkaMin: fast and resource frugal de novo comparative metagenomics.

Identifieur interne : 000081 ( Main/Exploration ); précédent : 000080; suivant : 000082

SimkaMin: fast and resource frugal de novo comparative metagenomics.

Auteurs : Gaëtan Benoit [France] ; Mahendra Mariadassou [France] ; Stéphane Robin [France] ; Sophie Schbath [France] ; Pierre Peterlongo [France] ; Claire Lemaitre [France]

Source :

Bioinformatics (Oxford, England) [ 1367-4811 ] ; 2020.

RBID : pubmed:31504187

Abstract

De novo comparative metagenomics is one of the most straightforward ways to analyze large sets of metagenomic data. Latest methods use the fraction of shared k-mers to estimate genomic similarity between read sets. However, those methods, while extremely efficient, are still limited by computational needs for practical usage outside of large computing facilities.

DOI: 10.1093/bioinformatics/btz685
PubMed: 31504187

Affiliations:

Le document en format XML

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<front><div type="abstract" xml:lang="en">De novo comparative metagenomics is one of the most straightforward ways to analyze large sets of metagenomic data. Latest methods use the fraction of shared k-mers to estimate genomic similarity between read sets. However, those methods, while extremely efficient, are still limited by computational needs for practical usage outside of large computing facilities.</div>
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SimkaMin: fast and resource frugal de novo comparative metagenomics.

SimkaMin: fast and resource frugal de novo comparative metagenomics.

Source :

Abstract

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